CleanFinder - Allelic Dropout Analyzer

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Genotyping Analysis Tool v1.0.0 — 🧬 Allelic Dropout

Allelic Dropout SNP Analyzer

Analyze long-read FASTQ data to detect heterozygous SNPs, which can be used to assess allelic dropout after CRISPR editing.

FASTQ File

No file selected

Stable Anchor Sequence

This should be a unique sequence far from the expected SNP.

Fetch from Gene Symbol & gRNA (Optional)

Providing gRNA ensures the reference is centered on your target site.

Reference Amplicon Sequence

Max Reads

Scan Window

Min Coverage

Min Allele Freq (%)

Max Allele Freq (%)

Allelic Dropout SNP Analyzer

Highest Quality SNP