CleanFinder Turbo

  ___ _                 
 / __| |___ __ _ _ _    
| (__| / -_) _` | ' \   
 \___|_\___\__,_|_||_|  
  ___ _         _       
 | __(_)_ _  __| |___ _ _
 | _|| | ' \/ _` / -_) '_|
 |_| |_|_||_\__,_\___|_|

Genotyping Analysis Tool v1.0.0 — ⚡ Turbo

Analyze CRISPR editing outcomes from FASTQ files or pasted sequences against a reference amplicon.

1. Reference Amplicon

Reference Sequence (Paste wildtype amplicon)

gRNA Sequence (Optional — for highlighting and windowing)

Window Padding (bp):

Window Padding: leave empty = full reference (default). Set a value to center analysis around the gRNA ± this many bp.

Advanced Settings (Gene Fetch, HDR, Buffers)

Fetch from Gene Symbol & gRNA

Providing gRNA ensures the reference is centered on your target site.

HDR Template (Optional)

Anchor Length (bp)

Max Mismatches

2. Sequence Data

Paste Reads (Raw sequences or FASTQ blocks)

Or Upload FASTQ Files

📂

Click to browse or drag files here

1. Reference Amplicon

2. Sequence Data

Analysis Results